Kazi Lutful Kabir, Ph.D.

SELECTED PUBLICATIONS

Kabir, K.L.; Ma B.; Nussinov R.; Shehu A., Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free Versus Antigen-Bound Antibody; Biomolecules 2022.

Kabir, K.L.; Bhattarai M.; Alexandrov B. S.; Shehu A., Single Model Quality Estimation of Protein Structures via Non-negative Tensor Factorization; 11th International Conference on Computational Advances in Bio and medical Sciences (ICCABS) 2021.

Kabir, K.L.; Nussinov R.; Ma B.; Shehu A., Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics; IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Workshop XIII: Computational Structural Biology Workshop (CSBW), 2021.

Akhter, N.; Kabir, K.L.; Chennupati G.; Raviteja V.; Alexandrov B.; Djidjev H.; Shehu A., Improved Protein Decoy Selection via Non-Negative Matrix Factorization; IEEE/ACM Transactions on Computational Biology and Bioinformatics 2021.

Kabir, K.L.; Parthasarathy P.V.; Tare Y., Connecting Quaternion-Based Rotationally Invariant LCS to Pedestrian Path Projection; Emerging Technologies in Data Mining and Information Security (IEMIS 2020), Part of Book Series: Advances in Intelligent Systems and Computing, vol. 1300, Springer 2021.

Kabir, K.L.; Chennupati G.; Raviteja V.; Djidjev H.; Alexandrov B.S.; Shehu A., Decoy Selection in Protein Structure Determination via Symmetric Non-negative Matrix Factorization; 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Kabir, K.L.; Hassan, L.; Rajabi, Z.; Akhter, N.; Shehu, A., Graph-Based Community Detection for Decoy Selection in Template-Free Protein Structure Prediction; Molecules 2019, 24(5), 854.

Kabir, K.L.; Akhter, N.; Shehu, A., Unsupervised Learning of Conformational States Present in Molecular Dynamics Simulation Data for Summarization of Equilibrium Conformational Dynamics; Biophysical Jouranl 2019, 116(3), 291a-292a. (Poster, BPS19 held in Baltimore, MD)

Kabir, K.L.; Akhter, N.; Shehu, A., Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics; 11th International Conference on Bioinformatics and Computational Biology (BICOB), 2019 held in Honolulu, HI. [BEST PAPER AWARD]

Akhter N.; Chennupati G.; Kabir, K.L.; Djidjev H.; Shehu A., Unsupervised and Supervised Learning over the Energy Landscape for Protein Decoy Selection; Biomolecules 2019; 9(10), 607.

Kabir, K.L., Alam F.F., Islam A.B.; , Word Embeddings for Semantic Resemblance of Substantial Text Data: A Comparative Study; Smart Systems and IoT: Innovations in Computing (SSIC 2019), Part of Book Series: Smart Innovation, Systems and Technologies, vol. 141, Springer 2020.

Kabir, K.L.; Akhter, N.; Shehu, A., From Molecular Energy Landscapes to Equilibrium Dynamics Via Landscape Analysis and Markov State Models; Journal of Bioinformatics and Computational Biology (JBCB, Issue: December 2019).

SELECTED PUBLICATIONS

Research Interests

Protein Structure Prediction

Molecular Dynamics Simulation

Machine Learning in Bioinformatics