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Book Chapters

  1. "The response of soybean roots to soybean cyst nematode at the molecular level"
    Plant Roots: The Hidden Half, 4th Edition, 2013 [URL]
    Benjamin F. Matthews, Heba M. M. Ibrahim, Parsa Hosseini, Nadim Alkharouf, Savi Natarajan.

Journal Publications

Publications @ Google Scholar

    2013

  1. "Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing."
    Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W. Alkharouf, Benjamin F. Matthews.
    BMC Genomics, [pdf]
  2. "Using an ensemble of statistical metrics to quantify largesets of plant transcription factor binding sites".
    Parsa Hosseini, Ivan Ovcharenko, Benjamin F. Matthews.
    Plant Methods, [pdf]
  3. "Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode".
    Benjamin F. Matthews, Hunter Beard, Margaret H. MacDonald, Sara Kabir, R Reham M. Youssef, Parsa Hosseini, Eric Brewer.
    Planta, [pdf]

    4. 2012

  4. "Gene Expression in Leaves of Susceptible Glycine max During Infection with Phakopsora pachyrhizi using Next Generation Sequencing".
    Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W. Alkharouf, Benjamin F. Matthews.
    Sequencing, [pdf]
  5. "MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery".
    Parsa Hosseini, Arianne Tremblay, Benjamin F. Matthews, Nadim W. Alkharouf.
    Bioinformation, [pdf]

    6. 2011

  6. "Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves".
    Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W. Alkharouf, Benjamin F. Matthews.
    Plant Pathology, [pdf]
  7. "Mapping cell fate decisions that occur during soybean defense responses".
    Prachi D. Matsye, Ranjit Kumar, Parsa Hosseini, Christina M. Jones, Arianne Tremblay,
    Nadim W. Alkharouf, Benjamin F. Matthews, Vincent Klink.
    Plant Molecular Biology, [pdf]
  8. "Analysis of Gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways".
    Heba MM Ibrahim, Parsa Hosseini, Nadim W. Alkharouf, Ebtissam HA Hussein,
    Abd El Kader Y Gamal El-Din, Mohammed AM Aly, and Benjamin F. Matthews.
    BMC Genomics, [pdf]

    9. 2010

  9. "Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402) as compared to the prolonged and potent resistant reaction of PI 88788".
    Vincent Klink, Parsa Hosseini, Prachi D. Matsye, Nadim W. Alkharouf, Benjamin F. Matthews.
    Plant Molecular Biology, [pdf]
  10. "An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets".
    Parsa Hosseini, Arianne Tremblay, Benjamin Matthews, Nadim W. Alkharouf.
    BMC Res. Notes, [pdf]
  11. "Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection".
    Arianne Tremblay, Parsa Hosseini, Nadim W. Alkharouf, Shuxian Li, Benjamin F. Matthews.
    Plant Science, [pdf]
  12. "Syncytium gene expression in Glycine max [PI 88788] roots undergoing a resistant reaction to the parasitic nematode Heterodera glycines".
    Vincent Klink, Parsa Hosseini, Prachi D. Matsye, Nadim W. Alkharouf, Benjamin F. Matthews.
    Plant Physiology and Biochemistry, [pdf]

    13. 2009

  13. "A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode)".
    Vincent Klink, Parsa Hosseini, Prachi D. Matsye, Nadim W. Alkharouf, Benjamin F. Matthews.
    Plant Molecular Biology, [pdf]
  14. "Population-specific gene expression in the plant pathogenic nematode Heterodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of the Glycine max genotype Peking."
    Vincent P Klink, Parsa Hosseini, Margaret H MacDonald, Nadim W Alkharouf, Benjamin F. Matthews.
    BMC Genomics, [pdf]