Publications

Kazi Lutful Kabir, Liban Hassan, Zahra Rajabi, Nasrin Akhter, Amarda Shehu (2019). Graph-Based Community Detection for Decoy Selection in Template-Free Protein Structure Prediction. Molecules, 24(3), 741.

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Kazi Lutful Kabir, Nasrin Akhter, Amarda Shehu (2019). Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics. BiCoB. (Best paper award).

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Kazi Lutful Kabir, Nasrin Akhter, Amarda Shehu (2019). Unsupervised Learning of Conformational States Present in Molecular Dynamics Simulation Data for Summarization of Equilibrium Conformational Dynamics. Biophysical Journal, Volume 116, Issue 3, Supplement 1, Pages 291a-292a.

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Nasrin Akhter, Amarda Shehu (2019). Unsupervised Learning for Decoy Selection in Protein Structure Prediction. Biophysical Journal, Volume 116, ISSUE 3, SUPPLEMENT 1, 192a.

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Nasrin Akhter, Gopinath Chennupati, Hristo Djidjev, Amarda Shehu (2018). Improved Decoy Selection via Machine Learning and Ranking. ICCABS.

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Wanli Qiao, Nasrin Akhter, Xiaowen Fang, Tatiana Maximova, Erion Plaku, Amarda Shehu (2018). From Mutations to Mechanisms and Dysfunction via Computation and Mining of Protein Energy Landscapes. BMC Genomics 19 (Suppl7):671.

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Liban Hassan, Zahra Rajabi, Nasrin Akhter, Amarda Shehu (2018). Community Detection for Decoy Selection in Template-free Protein Structure Prediction. ACM BCB Workshops.

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Nasrin Akhter, Wanli Qiao, Amarda Shehu (2018). An Energy Landscape Treatment of Decoy Selection in Template-free Protein Structure Prediction. Computation 6(2), 39.

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Nasrin Akhter, Liang Zhao, Desmond Arias, Huzefa Rangwala, Naren Ramakrishnan (2018). Forecasting Gang Homicides with Multi-level Multi-task Learning. SBP-BRiMS 2018.

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Nasrin Akhter, Amarda Shehu (2018). Analysis of Energy Landscapes for Improved Decoy Selection in Template-free Protein Structure Prediction. BICoB. (Finalist for best paper award).

Nasrin Akhter, Liban Hassan, Zahra Rajabi, Daniel Barbara, Amarda Shehu (2018). Learning Organizations of Protein Energy Landscape: An Application on Decoy Selection in Template-Free Protein Structure Prediction. Protein Supersecondary Structures, pp. 147-171.

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Nasrin Akhter, Jing Lei, Wanli Qiao, Amarda Shehu (2018). Reconstructing and Decomposing Protein Energy Landscapes to Organize Structure Spaces and Reveal Biologically-active States. BIBM.

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Nasrin Akhter, Amarda Shehu (2018). From Extraction of Local Structures of Protein Energy Landscapes to Improved Decoy Selection in Template-free Protein Structure Prediction. Molecules, 2018, 23(1), 216.

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